All functions
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alien
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Alien Mammals dataset: Example dataset for the package sensiPhy |
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alien
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Alien Mammals dataset: Example dataset for the package sensiPhy |
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alien
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Alien Mammals dataset: Example dataset for the package sensiPhy |
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clade_continuous()
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Influential Clade Detection - Trait Evolution Continuous Characters |
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clade_discrete()
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Influential Clade Detection - Trait Evolution Discrete Characters |
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clade_phyglm()
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Estimate the impact on model estimates of phylogenetic logistic regression after
removing clades from the analysis. |
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clade_phylm()
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Influential clade detection - Phylogenetic Linear Regression |
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clade_physig()
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Influential clade detection - Phylogenetic signal |
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influ_continuous()
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Influential Species Detection - Trait Evolution Continuous Characters |
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influ_discrete()
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Influential Species Detection - Trait Evolution Discrete Characters |
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influ_phyglm()
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Influential species detection - Phylogenetic Logistic Regression |
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influ_phylm()
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Influential species detection - Phylogenetic Linear Regression |
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influ_physig()
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Influential species detection - Phylogenetic signal |
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intra_clade_phyglm()
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Interaction between intraspecific variability and influential clade detection - Phylogenetic Logistic Regression |
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intra_clade_phylm()
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Interaction between intraspecific variability and influential clade detection - Phylogenetic Linear Regression |
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intra_influ_phyglm()
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Interaction between intraspecific variability and influential species - Phylogenetic Logistic Regression |
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intra_influ_phylm()
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Interaction between intraspecific variability and influential species - Phylogenetic Linear Regression |
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intra_phyglm()
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Intraspecific variability - Phylogenetic Logistic Regression |
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intra_phylm()
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Intraspecific variability - Phylogenetic Linear Regression |
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intra_physig()
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Intraspecific variability - Phylogenetic signal |
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intra_samp_phyglm()
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Interaction between intraspecific variability and species sampling - Phylogenetic Logistic Regression |
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intra_samp_phylm()
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Interaction between intraspecific variability and species sampling - Phylogenetic Linear Regression |
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match_dataphy()
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Match data and phylogeny based on model formula |
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miss.phylo.d()
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Phylogenetic signal in missing data |
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primates
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Primates dataset: Example dataset for the package sensiPhy |
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primates
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Primates dataset: Example dataset for the package sensiPhy |
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primates
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Primates dataset: Example dataset for the package sensiPhy |
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samp_continuous()
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Species Sampling uncertainty - Trait Evolution Continuous Characters |
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samp_discrete()
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Species Sampling uncertainty - Trait Evolution Discrete Characters |
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samp_phyglm()
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Sensitivity Analysis Species Sampling - Phylogenetic Logistic Regression |
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samp_phylm()
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Sensitivity Analysis Species Sampling - Phylogenetic Linear Regression |
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samp_physig()
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Sensitivity Analysis Species Sampling - Phylogenetic signal |
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sensiPhy
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Sensitivity Analysis for Comparative Methods |
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sensi_plot()
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Graphical sensitivity analysis for comparative methods |
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sensi_plot(<clade.physig>)
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Graphical diagnostics for class 'clade.physig' |
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sensi_plot(<influ.physig>)
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Graphical diagnostics for class 'influ.physig' |
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sensi_plot(<intra.physig>)
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Graphical diagnostics for class 'intra.physig' |
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sensi_plot(<samp.physig>)
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Graphical diagnostics for class 'samp.physig' |
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sensi_plot(<sensiClade>)
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Graphical diagnostics for class 'sensiClade' |
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sensi_plot(<sensiClade.TraitEvol>)
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Graphical diagnostics for class 'sensiClade.TraitEvol' |
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sensi_plot(<sensiInflu>)
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Graphical diagnostics for class 'sensiInflu' |
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sensi_plot(<sensiInflu.TraitEvol>)
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Graphical diagnostics for class 'sensiInflu.TraitEvol' |
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sensi_plot(<sensiIntra>)
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Graphical diagnostics for class 'sensiIntra' |
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sensi_plot(<sensiIntra_Clade>)
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Graphical diagnostics for class 'sensiIntra_Clade' |
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sensi_plot(<sensiIntra_Influ>)
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Graphical diagnostics for class 'sensiIntra_Influ' |
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sensi_plot(<sensiIntra_Samp>)
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Graphical diagnostics for class 'sensiIntra_Samp' and 'sensiTree_samp' |
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sensi_plot(<sensiSamp>)
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Graphical diagnostics for class 'sensiSamp' |
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sensi_plot(<sensiSamp.TraitEvol>)
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Graphical diagnostics for class 'sensiSamp.TraitEvol' |
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sensi_plot(<sensiTree>)
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Graphical diagnostics for class 'sensiTree' |
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sensi_plot(<sensiTree.TraitEvol>)
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Graphical diagnostics for class 'sensiTree.TraitEvol' |
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sensi_plot(<sensiTree_Clade>)
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Graphical diagnostics for class 'sensiTree_Clade' |
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sensi_plot(<sensiTree_Influ>)
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Graphical diagnostics for class 'sensiTree_Influ' |
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sensi_plot(<sensiTree_Intra>)
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Graphical diagnostics for class 'sensiIntra_Tree' |
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sensi_plot(<sensiTree_Samp>)
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Graphical diagnostics for class 'sensiTree_samp' |
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sensi_plot(<tree.bd>)
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Graphical diagnostics for class 'tree.physig' |
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sensi_plot(<tree.physig>)
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Graphical diagnostics for class 'tree.physig' |
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tree_bd()
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Phylogenetic uncertainty - net diversification rate |
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tree_clade_phyglm()
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Interaction between phylogenetic uncertainty and influential clade detection - Phylogenetic Logistic Regression |
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tree_clade_phylm()
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Interaction between phylogenetic uncertainty and influential clade detection - Phylogenetic Linear Regression |
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tree_continuous()
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Phylogenetic uncertainty - Trait Evolution Continuous Characters |
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tree_discrete()
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Phylogenetic uncertainty - Trait Evolution Discrete Characters |
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tree_influ_phyglm()
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Interaction between phylogenetic uncertainty and influential species detection - Phylogenetic Logistic Regression |
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tree_influ_phylm()
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Interaction between phylogenetic uncertainty and influential species detection - Phylogenetic Linear Regression |
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tree_intra_phyglm()
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Interaction between phylogenetic uncertainty and intraspecific variability - Phylogenetic logistic Regression |
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tree_intra_phylm()
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Interaction between phylogenetic uncertainty and intraspecific variability - Phylogenetic Linear Regression |
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tree_phyglm()
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Phylogenetic uncertainty - Phylogenetic Logistic Regression |
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tree_phylm()
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Phylogenetic uncertainty - Phylogenetic Linear Regression |
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tree_physig()
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Phylogenetic uncertainty - Phylogenetic signal |
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tree_samp_phyglm()
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Interaction between phylogenetic uncertainty and sensitivity to species sampling - Phylogenetic Logistic Regression |
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tree_samp_phylm()
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Interaction between phylogenetic uncertainty and sensitivity to species sampling - Phylogenetic Linear Regression |