R/sensi_plot.sensiSamp.R
sensi_plot.sensiSamp.Rdplot_samp_phylm Plot results from samp_phylm and
influ_phyloglm
# S3 method for sensiSamp sensi_plot(x, graphs = "all", param = "estimate", ...)
| x | output from |
|---|---|
| graphs | choose which graph should be printed on the output ("all", 1,2,3 or 4) |
| param | choose which model parameter should be ploted ("intercept" or "estimate") |
| ... | further arguments to methods |
For 'x' from samp_phylm or samp_phyglm:
Graph 1: Estimated slopes or intercepts for each simulation across percentages of species removed. Colours represent percentage of change in comparison with the full model (blue = lower than 5, orange = between 5 and 10 and red = higher than 10). The red horizontal line represents the original slope or intercept from the full model (with all species).
Graph 2: The proportion of estimated slopes and intercepts in each category across the percentage of species removed.
Graph 3: Estimated phylogenetic model parameter for each simulation across the percentage of species removed.
Graph 4: The percentage of significant slopes or intercepts across the percentage of species removed.
If model = "BM", only plots 1, 2 and 4 are printed. Plot 3, phylogenetic model parameter is not available for model = "BM"