Graphical diagnostics for class 'samp.physig'

Source: R/sensi_plot.samp.physig.R

plot_samp_phylm Plot results from samp_physig

# S3 method for samp.physig
sensi_plot(x, graphs = "all", ...)

Arguments

x

output from samp_physig
graphs

choose which graph should be printed on the output ("all", 1,2 and 3 )
...

further arguments to methods

Details

For 'x' from samp_physig:

Graph 1: Estimated phylogenetic signal for each simulation across percentages of species removed. Colours represent percentage of change in comparison with the full data estimate (blue = lower than 5, orange = between 5 and 10 and red = higher than 10). The red horizontal line represents the original phylogenetic signal estimated from the full model (with all species).

Graph 2: The proportion of estimated signal in each category across the percentage of species removed.

Graph 3: The percentage of significant signal estimates across the percentage of species removed.

See also

ggplot, samp_phylm samp_physig